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Strong Customer Authentication Best Practices for B2B and High-Risk Merchants

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Strong Customer Authentication (SCA) has become a core requirement for businesses processing digital payments, especially in regulated markets such as Europe. However, for B2B companies and high-risk merchants, SCA is much more than a compliance obligation: it is a strategic lever to reduce fraud, prevent chargebacks, and protect payment approval rates.

This guide explores Strong Customer Authentication best practices, focusing on real-world payment operations, fraud prevention, and scalability for B2B and high-risk business models, with practical insights aligned with how NextGen Payment supports merchants operating in complex environments.

What Is Strong Customer Authentication (SCA)?

Strong Customer Authentication is a security framework introduced under PSD2 (Payment Services Directive 2) that requires payment service providers to verify a customer’s identity using at least two independent authentication factors:

  • Something the customer knows (password, PIN)
  • Something the customer has (mobile device, token)
  • Something the customer is (biometrics such as fingerprint or facial recognition)

The objective of SCA is to reduce payment fraud, particularly card-not-present (CNP) fraud, while increasing trust in digital payments.

For B2B merchants, SCA is not simply a checkbox — it directly impacts conversion rates, payment acceptance, and long-term account stability.

Why SCA Matters for B2B and High-Risk Merchants

High-risk and B2B businesses operate under increased scrutiny from acquiring banks and card schemes. Poor SCA implementation can lead to:

  • Higher false declines
  • Increased chargeback ratios
  • Reduced approval rates
  • Risk of account monitoring programs (Visa, Mastercard)

When applied correctly, Strong Customer Authentication best practices help:

  • Reduce fraud exposure
  • Shift liability away from merchants
  • Protect merchant accounts
  • Improve relationships with acquirers and PSPs

This is where NextGen Payment plays a critical role, combining fraud prevention, chargeback protection, and payment orchestration into a unified approach.

SCA vs Fraud Prevention: Understanding the Difference

A common misconception is that SCA replaces fraud prevention tools. In reality:

  • SCA is a regulatory and authentication layer
  • Fraud prevention is a risk management strategy

Best-in-class payment infrastructures combine both.

SCA helps confirm that a legitimate customer is initiating the transaction. Fraud prevention solutions analyze behavioral patterns, velocity, device fingerprinting, and transaction context to identify suspicious activity — even before authentication is triggered.

At NextGen Payment, SCA is treated as one layer within a broader fraud prevention ecosystem, not as a standalone solution.

Common SCA Challenges for High-Risk Merchants

Over-Authentication and Conversion Loss

Applying SCA to every transaction can:

  • Increase friction
  • Reduce conversion rates
  • Drive customer abandonment

Under-Authentication and Compliance Risk

Not applying SCA when required can:

  • Trigger regulatory issues
  • Increase fraud liability
  • Lead to chargeback exposure

Strong Customer Authentication best practices focus on balance, not extremes.

Key Strong Customer Authentication Best Practices

1. Apply Risk-Based Authentication

Not all transactions carry the same risk. Merchants should apply SCA dynamically based on:

  • Transaction amount
  • Customer history
  • Device consistency
  • Geographic location
  • Industry risk profile

Risk-based SCA reduces friction while maintaining compliance.

2. Leverage SCA Exemptions Strategically

PSD2 allows exemptions that, when used correctly, significantly improve performance:

  • Low-value transactions
  • Trusted beneficiaries
  • Low fraud rate exemption
  • Transaction Risk Analysis (TRA)

High-risk merchants working with experienced payment partners like NextGen Payment can leverage these exemptions safely without increasing fraud exposure.

3. Optimize 3D Secure 2.0 Implementation

3D Secure 2.0 (3DS2) is the most common technical implementation of SCA for card payments.

Best practices include:

  • Frictionless flows whenever possible
  • Data-rich authentication requests
  • Adaptive challenge triggering
  • Alignment with issuer preferences

A poorly configured 3DS flow can damage approval rates more than fraud itself.

4. Align SCA with Chargeback Prevention

One of the most important — and often overlooked — benefits of SCA is liability shift.

When SCA is applied correctly:

  • Fraud-related chargebacks are transferred to the issuer
  • Merchants reduce dispute volume
  • Chargeback ratios improve

This alignment between SCA and chargeback protection is a core component of NextGen Payment’s risk management approach.

Learn more about chargeback protection here:
https://www.nextgenpayment.eu/services/chargeback-protection

5. Monitor KPIs Beyond Compliance

Successful SCA strategies are measured not only by compliance, but by performance metrics such as:

  • Approval rate
  • False decline rate
  • Challenge success rate
  • Fraud rate post-authentication
  • Chargeback ratio

Continuous monitoring allows merchants to fine-tune their SCA logic over time.

SCA Best Practices by Business Model

B2B Payments

B2B transactions often involve:

  • Higher ticket sizes
  • Repeat buyers
  • Corporate cards or invoices

Best practices include:

  • Whitelisting trusted clients
  • Using exemptions for recurring transactions
  • Combining SCA with account-level controls

Subscription and Recurring Billing

SCA is usually required only for:

  • Initial transaction
  • Card changes
  • Payment method updates

Optimized flows reduce churn and prevent unnecessary authentication challenges.

High-Risk Industries

Industries such as iGaming, digital services, and online platforms require:

  • Advanced risk scoring
  • Dynamic SCA triggering
  • Strong coordination between fraud prevention and authentication

This is where NextGen Payment’s high-risk expertise becomes a differentiator.https://www.nextgenpayment.eu/high-risk-merchant-account

SCA and Cross-Border Payments

Cross-border transactions add complexity:

  • Different regulatory expectations
  • Issuer behavior varies by region
  • Not all markets enforce PSD2 equally

Best practices include:

  • Region-specific SCA logic
  • Flexible routing strategies
  • Local acquiring when possible

Payment orchestration combined with SCA optimization helps maintain approval rates globally.

The Role of Payment Partners in SCA Success

Implementing Strong Customer Authentication best practices requires more than technical integration. It requires:

  • Understanding issuer behavior
  • Managing fraud exposure
  • Optimizing authentication flows
  • Protecting merchant accounts long-term

NextGen Payment supports merchants by combining:

This integrated approach allows businesses to stay compliant without sacrificing growth.

Future Trends in Strong Customer Authentication

SCA continues to evolve, with trends such as:

  • Biometric-first authentication
  • Behavioral authentication
  • AI-driven risk scoring
  • Reduced friction through passive authentication

Merchants who treat SCA as a strategic capability, not a regulatory burden, will gain a competitive advantage.

Final Perspective for B2B Businesses

Strong Customer Authentication is not just a compliance requirement — it is a strategic component of modern payment risk management.
For B2B and high-risk merchants, applying Strong Customer Authentication best practices helps protect revenue, reduce fraud, prevent chargebacks, and maintain healthy acquiring relationships.

With the right payment partner, SCA becomes an enabler of secure growth rather than a barrier.

NextGen Payment helps businesses implement SCA intelligently — balancing security, compliance, and performance at scale.

Frequently asked questions

What is Strong Customer Authentication (SCA)?

Strong Customer Authentication (SCA) is a security requirement under PSD2 that verifies a customer’s identity using at least two independent authentication factors to reduce payment fraud.

When is SCA required for card payments?

SCA is generally required for electronic payments in Europe, unless a valid exemption applies, such as low-value transactions or low-risk payments.

Is SCA mandatory for B2B transactions?

SCA applies to B2B card payments when PSD2 conditions are met, but many B2B transactions qualify for exemptions, especially when risk levels are low or transactions are recurring.

How does SCA help reduce chargebacks?

When SCA is correctly applied, liability for fraud-related chargebacks often shifts to the issuer, significantly reducing merchant exposure and dispute volume.

What is the difference between SCA and fraud prevention?

SCA authenticates the customer’s identity, while fraud prevention solutions analyze transaction risk using behavioral data, rules, and machine learning. The most effective strategies combine both.

Does SCA reduce payment approval rates?

Poorly implemented SCA can lower approval rates. Risk-based SCA and optimized 3D Secure 2.0 flows help maintain high approval rates while staying compliant.

What are SCA exemptions and why are they important?

SCA exemptions allow merchants to avoid unnecessary authentication for low-risk transactions, improving conversion rates without increasing fraud exposure.

Is 3D Secure the same as SCA?

No. 3D Secure 2.0 is a technical method used to implement SCA for card payments, but SCA can also be applied using other authentication methods.

How does NextGen Payment support SCA implementation?

NextGen Payment integrates SCA optimization, fraud prevention, and chargeback protection to help B2B and high-risk merchants stay compliant while protecting revenue.

Is SCA required for recurring payments?

SCA is usually required for the first transaction or when payment details change. Subsequent recurring payments may qualify for exemptions.

NextGen Payment provides secure transactions, fraud prevention, and banking solutions for high-risk businesses worldwide.